| Player | Team | Goals |
| Nikolay Filipov | Mellieha | 50 |
| Aleksander Ribic | Lija | 47 |
| Marian Gologan | Msida | 32 |
| Cleaven Portelli | Mdina | 29 |
| Zvezdan Vukovic | Msida | 28 |
| Antonello Brincat | Qrendi | 24 |
| Radoslav Kovachev | Mellieha | 21 |
| Antonio Camilleri | Attard | 18 |
| Jason Camilleri | Sirens | 18 |
| Maxime Landais | Qrendi | 18 |
| Andrew Scerri | Luqa | 17 |
| Daniel Brincat | Naxxar | 17 |
| James Borg | Siggiewi | 16 |
| Zeljko Anicic | Lija | 16 |
| Clayton Farrugia | Attard | 15 |
| Florin Manea | Lija | 15 |
| Adrian Marin Zalba | Attard | 14 |
| Herbert Spiteri | Msida | 14 |
| Ryan Xuereb | Msida | 14 |
| Craig Pickard | Mellieha | 13 |
| Gerry Christopher Fabbro | Attard | 13 |
| Aleksander Kristonjevic | Msida | 12 |
| Etienne Rodo | Mqabba | 12 |
| Nicola Delre | Lija | 12 |
| Ryan Bugeja | Lija | 12 |
| Daniel Saliba | Mellieha | 11 |
| Noel Portelli | Msida | 11 |
| Peter Mark Cachia | B’Bugia | 11 |
| Robert Magro | Mellieha | 11 |
| Byron Fenech | Attard | 10 |
| Chris Cutajar | Msida | 10 |
| Christian Wismayer | Naxxar | 10 |
| Mark Camilleri | Siggiewi | 10 |
| Noel Tabone | B’Bugia | 10 |
| Philip Caruana Turner | Siggiewi | 10 |
| Ranald Portelli | Mdina | 10 |
| Adrian Fenech | Naxxar | 9 |
| Joseph Vella | Mellieha | 9 |
| Kevin Loughborough | Attard | 9 |
| Mark Mizzi | Lija | 9 |
| Matthew Debono | Siggiewi | 9 |
| Steve Falzon | Mqabba | 9 |
| Andrew Briffa | Siggiewi | 8 |
| Isaac Delmar | Luqa | 8 |
| James Tabone | Sirens | 8 |
| John Paul Barbara | B’Bugia | 8 |
| Luke Zammit | Qrendi | 8 |
| Matthew Buttigieg | Attard | 8 |
| Randall Vella | Mdina | 8 |
| Redeemer Borg | Lija | 8 |
| Steve Shead | Qrendi | 8 |
| Alan Zammit | Qrendi | 7 |
| Darren Aitchinson | Mellieha | 7 |
| Etienne Bonnici | Sirens | 7 |
| Gianni Aquilina | Attard | 7 |
| Jason Gauci | Lija | 7 |
| Jeremy Cutajar | Lija | 7 |
| Khail Drago | Naxxar | 7 |
| Neil Cauchi | Mdina | 7 |
| Roderick Attard | Naxxar | 7 |
| Ryan Mifsud | Naxxar | 7 |
| Steve Pace | Mqabba | 7 |
| Andre Ciancio | Mqabba | 6 |
| Andrea Farrugia | Naxxar | 6 |
| Jean Bert Gatt | Lija | 6 |
| Jean Paul Abdilla | B’Bugia | 6 |
| Keith Mifsud | Luqa | 6 |
| Shaun Deguara | Mdina | 6 |
| Alan Micallef | Msida | 5 |
| Aleksander Melcic | Msida | 5 |
| Andrea Cutajar | B’Bugia | 5 |
| Eric Saliba | B’Bugia | 5 |
| Kurt Azzopardi | Naxxar | 5 |
| Lawrence Vella | Sirens | 5 |
| Matthew Dingli | Msida | 5 |
| Paul Bugeja | Naxxar | 5 |
| Simon Gingell Littlejohn | Siggiewi | 5 |
| Thomas Consoli | Mqabba | 5 |
| Wayne Mizzi | Mqabba | 5 |
| Andrea Grech | Luqa | 4 |
| Andrew Camilleri | Mdina | 4 |
| Carl Grech | Luqa | 4 |
| Dalziel Bugeja | Mdina | 4 |
| Glenn Gauci | Siggiewi | 4 |
| James Mizzi | Luqa | 4 |
| Josef Balzan | Mellieha | 4 |
| Justin Camilleri | B’Bugia | 4 |
| Owen Fiteni | Mqabba | 4 |
| Pierre Spiteri | Sirens | 4 |
| Roberto Sarcia | Mdina | 4 |
| Sam Vella | Qrendi | 4 |
| Sean Vella | Naxxar | 4 |
| Aaron Camilleri | Attard | 3 |
| Antoine Galea | Sirens | 3 |
| Bertram Azzopardi | Qrendi | 3 |
| Carlsten Xuereb | Mqabba | 3 |
| Conrad Dimech | Mqabba | 3 |
| Edward Falzon | Luqa | 3 |
| Gary Zerafa | Msida | 3 |
| George Chircop | Sirens | 3 |
| Jean Paul Galea | Qrendi | 3 |
| Justin Psaila | Mqabba | 3 |
| Kurt Farrugia | Naxxar | 3 |
| Larkin Emanuel Saffrett | Lija | 3 |
| Lydon Baldacchino | Naxxar | 3 |
| Marco Mercieca | Luqa | 3 |
| Nathaniel Borg | Mellieha | 3 |
| Paul Cumbo | Mqabba | 3 |
| Paul Falzon | Naxxar | 3 |
| Robert Peplow | Mdina | 3 |
| Robert Portelli | Luqa | 3 |
| Adrian Camilleri | Attard | 2 |
| Andrew Catania | Naxxar | 2 |
| Bernard Sciberras | Naxxar | 2 |
| Clayton Borg | Qrendi | 2 |
| Clive Formosa | B’Bugia | 2 |
| Daniel Gafa | Mdina | 2 |
| Darren Grech | Attard | 2 |
| Emerson Bonello | Mdina | 2 |
| Fabian Vella | Qrendi | 2 |
| Geoffrey Saliba | Sirens | 2 |
| Godfrey Cutajar | B’Bugia | 2 |
| Jean Marc Galea | Siggiewi | 2 |
| Jeffrey Fenech | Sirens | 2 |
| Joel Grima | Msida | 2 |
| John Paul Galea | Qrendi | 2 |
| Jonathan Sammut | Lija | 2 |
| Leonard Zammit | Sirens | 2 |
| Luke Buhagiar | Luqa | 2 |
| Marc Tabone Ferrante | Attard | 2 |
| Mark Spiteri | Mqabba | 2 |
| Mark Vella | Mellieha | 2 |
| Michael Ciappara | B’Bugia | 2 |
| Nathan Sammut Mock | Mdina | 2 |
| Omar Toutoungi | Lija | 2 |
| Ronald Spina | Qrendi | 2 |
| Ronnie Celeste | B’Bugia | 2 |
| Ryan Theuma | Sirens | 2 |
| Sandro Farrugia | Sirens | 2 |
| Steve Gingell Littlejohn | Siggiewi | 2 |
| Tyrone Grech | Mdina | 2 |
| Victor Fiteni | Mqabba | 2 |
| Wayne Vella | Luqa | 2 |
| Aaron Dalli | B’Bugia | 1 |
| Alan Chetcuti | Luqa | 1 |
| Alex Falzon | Mqabba | 1 |
| Andy Blundell | Msida | 1 |
| Anthero Agius | B’Bugia | 1 |
| Beppe Camilleri | Attard | 1 |
| Christian Attard | Luqa | 1 |
| Christian Barbara | Qrendi | 1 |
| Christopher Formosa | Mqabba | 1 |
| Clive Cutajar | Msida | 1 |
| Daniel Vella | Mdina | 1 |
| Dean Grech | Mdina | 1 |
| Duncan Bonello | Attard | 1 |
| Gabriel Mansueto | Naxxar | 1 |
| Gordon Zammit | Qrendi | 1 |
| Ian Cilia | Mellieha | 1 |
| John Micallef | Mdina | 1 |
| Jonathan Debono | Sirens | 1 |
| Jonathan Rogers | Qrendi | 1 |
| Justin Muscat | Luqa | 1 |
| Kalin Ganchev | Mellieha | 1 |
| Karl Carabott | Mqabba | 1 |
| Karl Muscat | Attard | 1 |
| Kenneth Zammit | Sirens | 1 |
| Larkin Vella | Msida | 1 |
| Mark Anthony Psaila | B’Bugia | 1 |
| Mark Briffa | Siggiewi | 1 |
| Matthew Gatt | Mdina | 1 |
| Mauro Gauci | Sirens | 1 |
| Miguel Alcazar de la Torre | Attard | 1 |
| Paul Saliba | Mdina | 1 |
| Paul Siem | Mdina | 1 |
| Robert Darmanin | Sirens | 1 |
| Salem Ben Halem | Msida | 1 |
| Sean Cassar Degabriele | Lija | 1 |
| Sean Keane | Lija | 1 |
| Victorio Ciantar | Mqabba | 1 |
| Wayne Dimech | Mqabba | 1 |